Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015880335.1_cds_XP_016437465.1_33223
CDS Infomation

[gene=LOC107763495] [db_xref=GeneID:107763495] [protein=serine/threonine-protein kinase ATR-like isoform X2] [protein_id=XP_016437465.1] [location=join(4191..4341,4436..4580,5328..5440,6052..6389,6515..6639,9116..9260,9365..9931,10015..10081,10936..11248,11532..12795)] [gbkey=CDS]
Sequence

ATGGCGAATCTCTCGAGTTTAGTCCACGAACTTCGAGAAGCAGCTTCATCATCTACACCT
CCAAACATCCGAAACGACGACGCATTAGAGGTCCGATTTCGCGCCGTACTTCCCAATCTT
CTCAATGCCTATGTCGTTCCTTCTTCTTCAGCGATAGAGAGAGAGGTTTTTGCTGTGCTA
AGGCTTATATCACACACTGCGAAGAACTTTCCTGGAGTTTATTACCATGGCAAGGCTAGT
GCTGTGCTTCCGGTGATAGGGCGCATTTTGCCATTTTTAGCTGAACCTACTTTTCGCTCT
AGACACGGGGTGGTTATTGAAACAATCGGAGCCCTGTTATCCACTCTTCGTACAGGAGAT
CGAGATGCTTATCGACAATTCTTTATGGACACAATATCGGTGGTTGAAGATCTTCTTAGT
GTTGCTTCACTATGTGATAAGCCAAGCTCTACAGAATCAAGGAAAGTACTTTTGAGGTGT
TTCAGTGAGTCACTCTGTGGAGGTTGGAGCAACCATGATACAACGGTATTAAGTGATCTC
CCCTTGTGTTGTAAGCCTTCCGACGGCAATGGTATTCTGATTAATGTCAAAGGCAAAGAA
AGGTGGCAGCCTTTTGCTTCTTCTTCCATCAAGATTCTCTGTAAATGTTTAACTGAAGGA
ACCCTATATGTTGAAGGACTCCTTGAGACCTCATCTGTTTTATCTGCATGTACCCTTCTG
TGTTATGGAGATGCTGATGTGCACATGGCATGTTTTGACTTGCTGAGAATCATTGGAGCA
GCTATGAATCATGAAATCATTCCTGTTGAGAGATTGATTCAATTGATTATGACCATATTA
CGCGGAGATGAGGATGCGCTTCCGGTCTTCAGCAATACAACTTATGATTCATCCATTGGT
GGATGCCTTCATGTATTATACTCCAGTTGTCCTGATGACATTGTTAGATCGACATCTGCC
GATTTAGTAAATATCTTTCCCCATTCGTTGCTTAAAACAAGAAGTCTTGTGCTGAAGGAT
GCTTTATGTCTTGCCTATACTCGTATTGCAAAGACTTGCCCCCCTCATATCTGGAGGCCT
GAATCTCTAATACATTTGCTTTACTCACCCACACCTATCATGCCTTTAATCGAGTGCTTT
CAAGTGGCTTTATCTAGGCTTTTTCCTGATCTTACTGGGGGTAAAAGCGTTAATAATGAT
GAAACAGATTTATCTGATGTGCATGAAAGTCCAAGGGCTGCAGAGAAGAGGCCAGGAGAA
GACTTGGAGATTTCAAATGCCAAACATCAGAAAATCGATGATGAAAATCGATGTTCCAGT
ATCAAATATGATGATGTGATTAAGCTTAGCCATGGATTTGGCTCTTTGGGGGAGAAACAG
TTTGCTGATCATATGCGTAGCTCATTGACTCTGTTTATTAAACTTCTAAAGCCTCCAAGT
CAGGAATCCAGTACTTTGGGCCCAGAAGTTGCATTGACAGCTCTTAGTACACTCTGTATT
ATTTTCTGCAGATATCCTCACATGGACCTTTCAATTCAAATATTCCATCAGATGTATGAA
TGGGTCCCTTGGGTGTGTGAACAGAAATTTCCATTCCCTATTGATTTACATTTCCTTCTG
GAAGCGATTCACAACCTATTGATCATAGCAGGATCCGTTCCTACTGAGAGTAAATATTTC
AAGACCAAGGGTGGCAACTCAGCTCTTATGCAGTCATTGATAAGGCTATCATGGACCGGA
TCTCAATCTACTGATACCCACTCATTGTCGAAGGCAAAGATCATTTCTCTGCGTGTGCTG
TCTAAAATGGGGGCTGTATTGCAAGGTGGAAATGATCTTGATATATTGGACTTGGGACTC
CATGATACCGCCGAGGATGTTAGGATCGAAGCTGTCATTTCAATGCCTGTGATATTAATG
TGGTCCGGTTTTGGTTTACTGAGTCACATGTTCAAGAGGCTGGAGATCCTGGAAAAAGAG
GCGGATGGACGAATTAACAAAGTAATCCCGGGGTGTCTTGGTTATTTGGCATGCCTTTAT
GCGTCCTGTACAACTGGTGTACTAACGGAATGCCAATGCAAATTTTACTTGCCAAAGGAT
AATATAAGACTAAATATGACAATGGATGACCTTGCGGGAGGATTTTGGTGTTCAAAGTGT
GACAGAAATGGACTTGTGAACCCATCAAATTCAACTGTGTTGTGTCCTCCTTACTTACAG
AAGAAAGAATCTACTAGAGATCATGATTATGTTTATTTACAATCCATCTTCTTCCGTCTT
CTTTTTGATGAATCATCAGAAGATGTTCAGTTAGCCTGTGTACGTGTGGTTCAGAGGATA
CTCCTCCATGGAACTGAAAATATTCTGATTAAAACAAGATATGAATGGTTAAAATGTGTT
GATTTCCTACTCATTCACAGGAAAAGGGCCATTCGAGAATCCTTTTCTAAACAGATTGGT
TTCTTCATTGAGGAACCTATTCTGAATTGTTTGTTCTTGGATGAGGGGGGCCACGAGTCT
GTGAGCAAATCAAAAGAACGAAAGTTCATTGACAAAATAAAACACGCTTTTGAAACAGCG
GATGATCCCTTGGTTTTTGCAACTCTTCTAGAAGCTACAGCTGAGATTATGAAGGTGGTT
GAGGTGCAGAGTCAGTCCTTTATGTTCTCTCTTATTTTATTGATTGATCAGCTTGATAAT
CCCCATGTGACAGTTAGAATAATTGCATCAAGGTTGATAATAAGGTCTTGCTACTTTCAT
CTTAAAGGAGGATTTGAATTAATTCTTTCTCGTTTTCTTCATATTCGAAATGAGTTTTTC
GATTACCTGTCTATAAGGCTTGCTAGCCGACCAAAAATGGTTGAAGAGTTTGCGGGAGCT
ATTCTTGGTATTGATACTGAAGAACTTGTGCAGAGAATGGTTCCTGTCGTCCTCCCAAAG
TTGGTCGTTACTCAGCAGGATAATGATCAAGCAATTTTCACCCTATATGAGCTCGCCAAG
TGCTTAAATACAGATATGGTGCAACTAATTGTTAATTGGCTACCTAAAGTACTTGCTTAT
GCTCTTCATCGAGCTGATGGGCAAGAATTGCTCTCTGTCCTTCAGTTCTACCATGAGCAA
ACTGGTTCCAACAAACAAGAAATTTTTGCTGCTGCACTCCCCGCTCTTTTAGACGAACTT
GTATGCTTCACAGATGAAGATGAGTCAAATGAGATAAGTAAAAGGTAA

Peptide Sequence

PEP ID

XP_016437465.1
PEP Infomation

PREDICTED: serine/threonine-protein kinase ATR-like isoform X2 [Nicotiana tabacum]
Sequence

MANLSSLVHELREAASSSTPPNIRNDDALEVRFRAVLPNLLNAYVVPSSSAIEREVFAVL
RLISHTAKNFPGVYYHGKASAVLPVIGRILPFLAEPTFRSRHGVVIETIGALLSTLRTGD
RDAYRQFFMDTISVVEDLLSVASLCDKPSSTESRKVLLRCFSESLCGGWSNHDTTVLSDL
PLCCKPSDGNGILINVKGKERWQPFASSSIKILCKCLTEGTLYVEGLLETSSVLSACTLL
CYGDADVHMACFDLLRIIGAAMNHEIIPVERLIQLIMTILRGDEDALPVFSNTTYDSSIG
GCLHVLYSSCPDDIVRSTSADLVNIFPHSLLKTRSLVLKDALCLAYTRIAKTCPPHIWRP
ESLIHLLYSPTPIMPLIECFQVALSRLFPDLTGGKSVNNDETDLSDVHESPRAAEKRPGE
DLEISNAKHQKIDDENRCSSIKYDDVIKLSHGFGSLGEKQFADHMRSSLTLFIKLLKPPS
QESSTLGPEVALTALSTLCIIFCRYPHMDLSIQIFHQMYEWVPWVCEQKFPFPIDLHFLL
EAIHNLLIIAGSVPTESKYFKTKGGNSALMQSLIRLSWTGSQSTDTHSLSKAKIISLRVL
SKMGAVLQGGNDLDILDLGLHDTAEDVRIEAVISMPVILMWSGFGLLSHMFKRLEILEKE
ADGRINKVIPGCLGYLACLYASCTTGVLTECQCKFYLPKDNIRLNMTMDDLAGGFWCSKC
DRNGLVNPSNSTVLCPPYLQKKESTRDHDYVYLQSIFFRLLFDESSEDVQLACVRVVQRI
LLHGTENILIKTRYEWLKCVDFLLIHRKRAIRESFSKQIGFFIEEPILNCLFLDEGGHES
VSKSKERKFIDKIKHAFETADDPLVFATLLEATAEIMKVVEVQSQSFMFSLILLIDQLDN
PHVTVRIIASRLIIRSCYFHLKGGFELILSRFLHIRNEFFDYLSIRLASRPKMVEEFAGA
ILGIDTEELVQRMVPVVLPKLVVTQQDNDQAIFTLYELAKCLNTDMVQLIVNWLPKVLAY
ALHRADGQELLSVLQFYHEQTGSNKQEIFAAALPALLDELVCFTDEDESNEISKR

Transcript Sequence

Gene sequence data has not been registered.